YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Surf1-PA
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLGNQMCR QVAFNIQTVF RNPGTANNPR LITRKMTQQR PPVNWTTSIP NQAAKDKEKI  60
   61 APLGWFLLLI PATTFGLGCW QVKRKIWKEQ LIKDLNKQLS TAPVALPDDL TDLAQMEYRL 120
  121 VKIRGRFLHD KEMRLGPRSL IRPDGVETQG GLFSQRDSGN GYLIVTPFQL ADRDDIVLVN 180
  181 RGWVSRKQVE PETRPLGQQQ AEVELTAVVR KGEARPQFTP DHKGNVYLYR DLARMCAATG 240
  241 AAPVFLDAVY DPQTAAHAPI GGQTRVTLRN DHLSYLVTWF SLSAATSFLW YRQIVKRIPF 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	272	0.67
Transmembrane Helix	273	291	0.77
Cytoplasmic	292	300	0.56