YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220945676
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFAEHLTAH ITPEWRKQYI NYEEMKAMLY AAIEQSPSAE LVEREMVTRY FAKFDEEFFH  60
   61 YCDKELAKIN TFYSEKMAEA TRKYGSLRSE LTEALEMGHP KKLPAWKRRT PLGKKNVPAR 120
  121 KIQDLKLAFS EFYLGLILLQ NYQNLNFTGF RKILKKHDKL LSVDYGARWR TDHVEAAHFY 180
  181 TNKDIDRLIQ ETEQAVTQDI EGGDRQRAMK RLRVPPLGEQ QSPWTTFKVG LFSGAFVVLF 240
  241 ITVVIAAMFY GFGENWRAGM RMFRAPFLII ECLFLWGVNV YGWRSSGVNH VLIFELDPRN 300
  301 HLSEQNIMEV ASVFGVIWAC CVLSYIFCDP LGIPQYAAPL CLYTLMAAFL LNPTKTFHHE 360
  361 ARFWAIRILI RVIMAPFCFV NFADFWLADQ LNSMVPAFLD IPFLICFFGR SPTWHKAGKA 420
  421 ASHCVEYVSL LHPIVAIMPA YFRFAQCIRR YRDTKESFPH LVNAAKYATS FFVVIFAHKY 480
  481 HTTTDTYPLS KENPWFYCWI TAAIFSSCYA YTWDIKMDWG LFDSKAGDNR FLREEIVYSS 540
  541 TWFYYFGIIE DLILRFSWTL SMSLIEAGYI EGDVMMTILS PLEVFRRFIW NYFRLENEHL 600
  601 NNVGKFRAVR DISVAPMDCS DQTTILRMMD ETDGVLNRRR GKAAGGKSAT KKNKQEQRLL 660
  661 LQGESIEDLC S

Type	Start	End	Confidence
Cytoplasmic	1	228	0.71
Transmembrane Helix	229	252	0.91
Non-Cytoplasmic	253	262	0.64
Transmembrane Helix	263	283	0.83
Cytoplasmic	284	306	0.71
Transmembrane Helix	307	327	0.84
Non-Cytoplasmic	328	334	0.69
Transmembrane Helix	335	354	0.87
Cytoplasmic	355	367	0.73
Transmembrane Helix	368	388	0.89
Non-Cytoplasmic	389	393	0.82
Transmembrane Helix	394	414	0.60
Cytoplasmic	415	461	0.50
Transmembrane Helix	462	481	0.54
Non-Cytoplasmic	482	494	0.50
Transmembrane Helix	495	515	0.81
Cytoplasmic	516	671	0.59