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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vn-PA
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAQHLRKWS LKTKKQLMPL ILLIISYMLL LNTCVLSSSA TTQQQQQQQQ QQQHLPRLWE  60
   61 GSAEESSYYI PLSSDNGSGS SESSAESGSS SSRSSSNNID NNILSRLLSL NSNSLSSRSN 120
  121 VKLKPATVFD AGSSTPAQQE QHVAAVPEQQ QQQQQQQQSM QKVPNTLINS QIYNLLYNGM 180
  181 PSEAASSKMR RHIQPSQLPH QPESRAQLPS NYSSRPAVRS YLIESYEMPE SMLEDRSPEQ 240
  241 AARSRRDGSN TNGSRQQQRT GHRQQLQQDK RDHRRQRQDQ QKEQRQQQQQ RQHKSGNKHQ 300
  301 QQQQQRRKHQ RKHQRYNRYC SARDPAQLAF AAPTVFQGVF KSMSADRRVN FSATMKVEKV 360
  361 YKQQHDLQLP TLVRLQFALS NSSGECDIYR ERLMPRGMLR SGNDLQQASD ISYMMFVQQT 420
  421 NPGNFTILGQ PMRVTHLVVE AVETAVSENY TQNAEVTKIF SKPSKAIIKH GKKLRIVCEV 480
  481 SGQPPPKVTW FKDEKSINRK RNIYQFKHHK RRSELIVRSF NSSSDAGRYE CRAKNKASKA 540
  541 IAKRRIMIKA SPVHFPTDRS ASGIPCNFDY CFHNGTCRMI PDINEVYCRC PTEYFGNRCE 600
  601 NKWPDSRYFV AIYGQIHTLN NDY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle