YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGRP-LD-PB, PGRP...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSHIAVRV ARRSPSPAAV SQSSYGSLGS SQDIHIRVDK EGVASESTPL LAAAQRSIKT  60
   61 SSSLTASVSA SSTTPSNCRR NPTLHEDCFN WRSVGLLVMC ASALALAAYL LWRQTQTPDF 120
  121 GYRLSIVGHG IWSDMELQGR GTLFDPIGVG TVIFTHTGSN ECHDDCPDVL HKLERSHVGE 180
  181 LPYNFLVAGD CQVFEAQGWH YRSQYPRDLN GIDSLVMAFV GNFSGRPPID CQLMAAQALI 240
  241 LESLKRRILQ PIYQLFVLGS YTDALQRELR HWPHYASHQT SK

Type	Start	End	Confidence
Cytoplasmic	1	88	0.93
Transmembrane Helix	89	112	0.87
Non-Cytoplasmic	113	282	0.96