YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220954262, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLSETEAE VTMQENVVHE SLPQIPVATS VSCCFVLAVL YVGSLYIWST KHNRDHPTTV  60
   61 KRRFASVSMV MLAAPFFVYF FSSPELLSRV PFPKLLGLRL EGLWQAVVIP YSLTVLLFLG 120
  121 PIFVNMQNES VRSYFDLDYW RGSFGSIIWV RNHVIAPLSE EFVFRACMMP LILQSFSPLV 180
  181 AVFITPLFFG VAHLHHIAER LSLGVELSTA LLIGLFQFIY TTLFGFYSAF LFARTGHVMA 240
  241 PILVHAFCNH MGLPDLQDLW QQDLWRRVVA IILYLAGFVG WMFLVPLATD PSIYDNTLYW 300
  301 NA

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.89
Transmembrane Helix	25	48	0.89
Cytoplasmic	49	63	0.82
Transmembrane Helix	64	83	0.93
Non-Cytoplasmic	84	102	0.86
Transmembrane Helix	103	125	0.90
Cytoplasmic	126	136	0.85
Transmembrane Helix	137	155	0.57
Non-Cytoplasmic	156	170	0.55
Transmembrane Helix	171	194	0.84
Cytoplasmic	195	202	0.56
Transmembrane Helix	203	224	0.79
Non-Cytoplasmic	225	229	0.44
Transmembrane Helix	230	253	0.63
Cytoplasmic	254	267	0.80
Transmembrane Helix	268	288	0.91
Non-Cytoplasmic	289	302	0.87