YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sinu-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKPSHFARE DSQEHLPTSH TQNSHTVNMK RRTLSGSCGV GVFVFAFAFI VIAFATPSWL  60
   61 VSDYRITGAK LDRLGLWVHC FRSLPDVNDD SQRRFFVGCR WVYDPFTTGY DEIRGFLLPA 120
  121 FMIATQFFYT LAFIGMLVSA IGVLVFILCA GPDQKHFITL IKSLGYVLLG AGVSAAIAVI 180
  181 VFAGFGNRNG WMPEHANNWF GWSFILACVG TVLTLVASTL FLSEAHPTKR KTKQKHSVPS 240
  241 KNSHPKHYSR TSLRRNILTN SFW

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	56	0.89
Non-Cytoplasmic	57	126	0.96
Transmembrane Helix	127	150	0.92
Cytoplasmic	151	163	0.85
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	199	0.94
Transmembrane Helix	200	222	0.94
Cytoplasmic	223	263	0.98