YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10671-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKRRPLRP NLGGTAGSPS SSGSNMNFRP GGPDITRSEA RGTRPTAAPT SIREILVMGV  60
   61 IHLCKKTIFF NTDLKVALYL GSLFVISVIG DFVPFPKTYF ARSDNLFNQY FVKIGWGWTL 120
  121 LFVVPFLVLS AYTITCGDHK RMLRHHFPRI VIATFFWFFW TKLFNVVENS YGRCTTKGYA 180
  181 TKSSCLKAGH LWKGFDISGH AFILIHSSLV LIEEARPIIR WETIKEHIRN ERHNRSTAEN 240
  241 SGTNPLRTLN EEQMRSLQFL YKRLTPIIRT LFIGMAALQL LWDIMLVGTM LYYHRMIEKV 300
  301 ISGIIAILTW YFTYRFWYPT PGLLPEAPGN GSFSYQREIP TFPFKRPSHL STGAATTSSG 360
  361 SNSSRTNLNG KAATTGVPRD QQIPTFMGMP LFTSPKAASA AANLLMSDQQ KRERDREQQT 420
  421 LES

Type	Start	End	Confidence
Cytoplasmic	1	75	0.94
Transmembrane Helix	76	95	0.92
Non-Cytoplasmic	96	113	0.93
Transmembrane Helix	114	136	0.92
Cytoplasmic	137	144	0.92
Transmembrane Helix	145	163	0.84
Non-Cytoplasmic	164	196	0.85
Transmembrane Helix	197	215	0.74
Cytoplasmic	216	264	0.88
Transmembrane Helix	265	286	0.85
Non-Cytoplasmic	287	295	0.64
Transmembrane Helix	296	314	0.86
Cytoplasmic	315	423	0.88