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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47117884
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLADSAIC FLLLSLLLIG ACLVTPTEGR AKDDRRTRGR GSSSGVLSSS SSSSNNMNNG  60
   61 YYSGSSSTAG SSSGYVFTSS SAVNSGSTGY SGPMDSTGFC TRRRDMKLMC YCTPDENHVP 120
  121 VQKAECWVFS EGLHQNDTTW TRFYQQKRLR ELKFVIQNNA RLDYIPTMII EPLKNLSSIV 180
  181 IEYSQVEIVK SYAFANLPFL ERIILNNNHI MALDQDAFAN HIRLRELNLE HNQIFEMDRY 240
  241 AFRNLPLCER LFLNNNNIST LHEGLFADMA RLTFLNLAHN QINVLTSEIF RGLGNLNVLK 300
  301 LTRNNLNFIG DTVFAELWSL SELELDDNRI ERISERALDG LNTLKTLNLR NNLLKKIDNG 360
  361 LLRGTPALLS INVQANKLET LTFYTFQPIM DNLVNSTSEL LVSDNKFICD CRLQWIFELK 420
  421 NRTRHLQLRD SLEDLHCTLQ EPKLSHFVDP VPPTILDVLN IGGFTAIGSN SASMGGVGNS 480
  481 VVGSSYSGLT MDDSRKHLGS RSRQALRGQR QFASSAENVV ESKMRRRRKR QEEVKEKDLA 540
  541 AVAPAHKRYD YYDDNNGGMS LGHGLDLDDN LSLHKQGFYG AGSPVVGHND VDVLMTSHSA 600
  601 SGDALDILTT KNAIYIKLFL LKPEMLPCHD ELSDPTELPL SRDLMDVRSN VGQDMSTAGA 660
  661 NSLAQGMTII VSLVALMMIS RG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle