YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Syx17-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDEKLPLK QAEVSIQRFQ DVAVPHHLSL LKNHRSNIEK SLALGDWQKI KKEELNAMRV  60
   61 IKQIKNLLLE MDALREKVRE EDLERFDDLM KPGRDTAFAG MKEFAELQLK SPTSTLSSQY 120
  121 DDDLDNQPQE VDMNSLPAHR HMPQLQLNFQ LEEHQLAQRQ ACLDQMENLQ QEIYDLHGMF 180
  181 QGMRQLTAEQ SVAVEKIADN AEEALENVQQ GELNLRRALT YKKAMYPVVG ALLGTCVGGP 240
  241 IGLVAGMKAG GLAAVGCGIL GFTGGSVLKA NPNVMHGNIE EEQVEPDSES TERLELKEKP 300
  301 E

Type	Start	End	Confidence
Cytoplasmic	1	223	0.96
Transmembrane Helix	224	244	0.91
Non-Cytoplasmic	245	249	0.76
Transmembrane Helix	250	270	0.86
Cytoplasmic	271	301	0.91