YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DopEcR-PC, DopEc...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEMSYLQDN SKVEALTKAV LISILGVAIV LSNLLIIATY ANFKGPTEVI NYYLLSLAIA  60
   61 DLLCGLLVVP FSVYPALTGE WMYGDIVCRF TGYLEVTLWA VSVYTFMWIS VDRYLAVRKP 120
  121 LRYETVQTKT RCQCWMVFTW ISAALLCCPP ILGYSMPIEN NMTHICMLDW GNMAAYSATL 180
  181 AILVLGPSLI SIVHNYGYIF VMMRKIRSGE PIHDKEYATA LAENLSNPSH MMSFALVFAF 240
  241 WVSWLPWILL RLYEVVTGDV IQSTLINFAV VWIGILNSFW KILIMTSMSP QFRIALRVFC 300
  301 LTICCKTKGR LQAELIGLDP DD

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.88
Transmembrane Helix	19	41	0.91
Cytoplasmic	42	51	0.79
Transmembrane Helix	52	74	0.91
Non-Cytoplasmic	75	95	0.78
Transmembrane Helix	96	115	0.85
Cytoplasmic	116	133	0.91
Transmembrane Helix	134	154	0.93
Non-Cytoplasmic	155	174	0.90
Transmembrane Helix	175	198	0.92
Cytoplasmic	199	229	0.94
Transmembrane Helix	230	250	0.88
Non-Cytoplasmic	251	263	0.77
Transmembrane Helix	264	284	0.90
Cytoplasmic	285	322	0.96