YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Sc2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEILNAKN SKPYGKVKVP SGATPIGDLR ALIHKTLKQT PHANRQSLRL ELKGKSLKDT  60
   61 DTLESLSLRS GDKIYVKDLG PQIGWKTVFL AEYAGPLIVY LIFYFRPELV YGKAASLPIS 120
  121 LTTHIAAGCY TVHYVKRLLE TIFVHRFSHA TMPLRNLFKN CTYYWGFTAY VSYHVNHPQF 180
  181 TSPCMCTVWG ALGAFALCEL GNFSVHIALR NLRPPGTKVR KIPVADGNPL TKLFDLVSCP 240
  241 NYTYEIGAWV SFSVLTSCLA AYLFAFAGAF QMTIWALAKH RNYKKEFKDY PRQRRSIFPF 300
  301 VL

Type	Start	End	Confidence
Cytoplasmic	1	82	0.90
Transmembrane Helix	83	104	0.65
Non-Cytoplasmic	105	113	0.62
Transmembrane Helix	114	134	0.64
Cytoplasmic	135	184	0.66
Transmembrane Helix	185	207	0.73
Non-Cytoplasmic	208	251	0.65
Transmembrane Helix	252	275	0.81
Cytoplasmic	276	302	0.72