YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12006-PA
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.85
Transmembrane Helix	5	26	0.84
Non-Cytoplasmic	27	56	0.86
Transmembrane Helix	57	73	0.67
Cytoplasmic	74	109	0.70
Transmembrane Helix	110	130	0.83
Non-Cytoplasmic	131	152	0.91
Transmembrane Helix	153	175	0.93
Cytoplasmic	176	190	0.90
Transmembrane Helix	191	214	0.85
Non-Cytoplasmic	215	242	0.96
Transmembrane Helix	243	265	0.92
Cytoplasmic	266	276	0.88
Transmembrane Helix	277	295	0.83
Non-Cytoplasmic	296	301	0.70
Transmembrane Helix	302	319	0.69
Cytoplasmic	320	328	0.62
Transmembrane Helix	329	348	0.93
Non-Cytoplasmic	349	561	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIYVFLLI LAVRLASVFV VQTYYVPDEY WQSLEVAHKL TFGYGYLTWE WVQGIRSYVY  60
   61 PLLIAGLYKI LALLQLDSAH LLVVLPRIVQ ALLSAYSDYR FFVWTGKRKW ALFLILVPWF 120
  121 WFYTGSRTLA NTLEASLTTI ALSYFPWYGE STAYLWPAAI CCFLRPTAAV IWLPLSLYHL 180
  181 RRSRQNVLEL ILKRFVLIGL LVAGLGIAID TYWHGQLIVT PYEFLKYNIF NNIGSFYGSH 240
  241 PWHWYFSVGL PTVLGINTLP FIFGVMETVK KSEKYPVSKQ LLITIFLTLV VLSAVEHKEF 300
  301 RFVSPLLPLC LYVITDALSR WSIRASSTML WTTALVILVG NVMPAWYLST VHQKGPIELM 360
  361 PKLREIAREY RDEREHQANI LFLMPCHSTP YYSHIHQNVT MRFLTCEPNL EKKEQYKDEA 420
  421 DRFFEDPVHW INSHIPMHPL TALPTHVVLF DPLAENISVF LRNYRLLHRI EHAEVTRLEG 480
  481 SQALVDQWSE ALGAQSPNLA SLLQNRQSRT GRSILVYQRL KKGEENAFNR GPDSGQHEPD 540
  541 VHDHPPLEDL VLANENENLF N