YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23092908, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNGQSKRQ PWVKNLYSNR EYPDNYTDAS FLKDLRTNLH CRIYTFGEAI AGITVLNNQI  60
   61 SCITGFLILY QLMLSDSVSP TTILVPSCGI TGIGYLCYRG RSLSWALLGE DSKTLVTVVL 120
  121 FGYLFSPMLH TLTQAISTDT IYTMTFFVLL GNLIFGHYGL DVAMVSKVGN IYGYWSQAVS 180
  181 LNAAIFGAIC LASRLPTSYH AFVLLVEAAV FFVLYPIMTE ANWHAGFMLP IFAICCMALY 240
  241 CISRPVLYLY ASTTIFINFV CPFIFVWQQQ YKFNIHGPWD EAIVEENTEE NLDGNL

Type	Start	End	Confidence
Cytoplasmic	1	48	0.91
Transmembrane Helix	49	70	0.82
Non-Cytoplasmic	71	77	0.73
Transmembrane Helix	78	98	0.86
Cytoplasmic	99	113	0.79
Transmembrane Helix	114	133	0.81
Non-Cytoplasmic	134	140	0.61
Transmembrane Helix	141	160	0.89
Cytoplasmic	161	170	0.61
Transmembrane Helix	171	192	0.85
Non-Cytoplasmic	193	197	0.48
Transmembrane Helix	198	218	0.73
Cytoplasmic	219	222	0.42
Transmembrane Helix	223	242	0.91
Non-Cytoplasmic	243	246	0.37
Transmembrane Helix	247	267	0.89
Cytoplasmic	268	296	0.46