YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rasp-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.74
Transmembrane Helix	15	34	0.86
Non-Cytoplasmic	35	74	0.90
Transmembrane Helix	75	93	0.85
Cytoplasmic	94	101	0.79
Transmembrane Helix	102	122	0.87
Non-Cytoplasmic	123	131	0.58
Transmembrane Helix	132	155	0.82
Cytoplasmic	156	168	0.76
Transmembrane Helix	169	189	0.72
Non-Cytoplasmic	190	209	0.69
Transmembrane Helix	210	228	0.78
Cytoplasmic	229	241	0.67
Transmembrane Helix	242	268	0.75
Non-Cytoplasmic	269	291	0.77
Transmembrane Helix	292	314	0.83
Cytoplasmic	315	362	0.79
Transmembrane Helix	363	382	0.78
Non-Cytoplasmic	383	386	0.56
Transmembrane Helix	387	408	0.72
Cytoplasmic	409	428	0.76
Transmembrane Helix	429	449	0.89
Non-Cytoplasmic	450	461	0.76
Transmembrane Helix	462	481	0.84
Cytoplasmic	482	500	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLPDRSLL TRCEIFVYFG VYIAYIVVGL YKIYGLRDHI VKEAKFQFPE GWSLYPFSQR  60
   61 RRDDSNDELE NFGDFIVSFW PFYLLHVAVQ GFIRWKRPRL QCLGFIGVCA LALSVNLDWS 120
  121 SMVLLVTLIA SYYIVSLLSL KFLVWLLSAG WILCINVMQK NVWWTDRVGY TEYVLVIVTM 180
  181 SWSVLRGCSY SLSKIGAKQE DLTRYSLVQY LGYAMYFPCL TYGPIISYQR FAARREDEVQ 240
  241 NWLGFVGGVL RSAIWWLVMQ CALHYFYIHY MSRDVRMVEM MDSVFWQHSA GYFMGQFFFL 300
  301 YYVVTYGLGI AFAVQDGIPA PNRPRCIGRI HFYSDMWKYF DEGLYEFLFQ NIYAELCGKR 360
  361 SSAAAKFGAT ALTFAFVFVW HGCYTYVLIW SILNFLCLAA EKVFKTFTAM PEYQRWTQRH 420
  421 LGAVGAQRLY AMLATQLFIP AAFSNVYFIG GQEIGDFLMR GAYLSGVGNY VALCFCSYCF 480
  481 FQCSELLLTK SDGRSKTKTF