YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11537-PA, CG11...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	228	0.96
Transmembrane Helix	229	250	0.89
Non-Cytoplasmic	251	261	0.79
Transmembrane Helix	262	285	0.84
Cytoplasmic	286	293	0.72
Transmembrane Helix	294	312	0.92
Non-Cytoplasmic	313	316	0.76
Transmembrane Helix	317	339	0.91
Cytoplasmic	340	349	0.87
Transmembrane Helix	350	372	0.90
Non-Cytoplasmic	373	379	0.83
Transmembrane Helix	380	400	0.95
Cytoplasmic	401	435	0.92
Transmembrane Helix	436	452	0.81
Non-Cytoplasmic	453	469	0.72
Transmembrane Helix	470	492	0.86
Cytoplasmic	493	502	0.61
Transmembrane Helix	503	521	0.85
Non-Cytoplasmic	522	527	0.80
Transmembrane Helix	528	552	0.87
Cytoplasmic	553	563	0.87
Transmembrane Helix	564	586	0.85
Non-Cytoplasmic	587	619	0.90
Transmembrane Helix	620	638	0.96
Cytoplasmic	639	680	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGRSYGQR QSDTLESSFE LEDSEAEQVN SPVAIKGEPS AHGDTDRDGD ADRERQESGE  60
   61 QTDSLSTRSS SSTPTTADVA DVETISSLPL SPPAFGGRGN QLVKRHSPLK DKQAEQADSS 120
  121 SSSSCSQQPD ADDVPTTSRY AAAAAHPSAA FAETAITASS GSGRVCGGSG GAAHRRTHSA 180
  181 ASYISMRSQG GNSEATPERP KRNRFFEWIR VVCNICCCKS SGIGEPSVHH ALVVIFLEFF 240
  241 AWGLLTMPII STLNQTFPDH TFLMNGLVMG IKGILSFLSA PLIGALSDIW GRKFFLLVTV 300
  301 FFTCLPIPLM SINTWWFFAM ISISGAFAVT FSVVFAYVAD VTTPEERSKA YGLASATFAA 360
  361 SLVISPALGN ALMEMYGDTL VVALSTAIAL LDVFFILVAV PESLSEKMRP ASWGAPISWE 420
  421 QADPFLALRK VGTDKTVLML CLTVLLSYLP EAGEYSCMFV YLKLKMGFNY VEVSVFIAIV 480
  481 GILSITVQVT LGSFMQVFGA KRTIIMGLAL EIVQLLWYGF GSQKWMMWSA GVVAALGSIT 540
  541 YPAISAFVSL YAAPESQGAV QGMITGMRGL CNGLGPAVFG VVFYLFNVDL NDDHDSHAKS 600
  601 SGSRATNVEK ISQHVPGPPF VFGALCVFCA IIVSAFIPEG QTSTLEKKRA SLDVQYEIEP 660
  661 GHKAPSSLAP LIRSDSLAQL