YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FR-PA, FBpp03043...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTAVARLL LRLELPSPGV MPPPPTDYDY GGPISDDEFL ASAMATEGPT VRYDLFPQNN  60
   61 SQPTLQIVLN HTEVQTDLQY PHYEDLGLDP DPNWTRICED VYNPLLENNR IEFWVCGVLI 120
  121 NIVGVLGILG NIISMIILSR PQMRSSINYL LTGLARCDTV LIITSILLFG IPSIYPYTGH 180
  181 FFGYYNYVYP FISPAVFPIG MIAQTASIYM TFTVTLERYV AVCHPLKARA LCTYGRAKIY 240
  241 FIVCVCFSLA YNMPRFWEVL TVTYPEPGKD VILHCVRPSR LRRSETYINI YIHWCYLIVN 300
  301 YIIPFLTLAI LNCLIYRQVK RANRERQRLS RSEKREIGLA TMLLCVVIVF FMLNFLPLVL 360
  361 NISEAFYSTI DHKITKISNL LITINSSVNF LIYIIFGEKF KRIFLLIFFK RRLSRDQPDL 420
  421 IHYESSISNN GDGTLNHRSS GRFSRHGTQR STTTTYLVAT GGPGGGGCGG GGGNNSLNNV 480
  481 RLTQVSGSPG LVKIKRNRAP SPGPVVYFPA REMQRSASTT NSTTNNNTSI GYDWTLPDSK 540
  541 KLGHVSSGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	112	0.98
Transmembrane Helix	113	138	0.87
Cytoplasmic	139	153	0.88
Transmembrane Helix	154	175	0.86
Non-Cytoplasmic	176	190	0.83
Transmembrane Helix	191	216	0.81
Cytoplasmic	217	233	0.93
Transmembrane Helix	234	254	0.88
Non-Cytoplasmic	255	296	0.93
Transmembrane Helix	297	316	0.98
Cytoplasmic	317	336	0.96
Transmembrane Helix	337	359	0.94
Non-Cytoplasmic	360	376	0.91
Transmembrane Helix	377	397	0.82
Cytoplasmic	398	549	0.76