YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1275-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSLGSGKA NMDPALINFK VLYVLTQLCG LTMIVLVATW IGQHFGGLAG TSNPGVEFNW  60
   61 HPLFMTIGFI YLYGNSILIY RGFRTTRKKT LKLTHAGIHM GAFILTVIAL KTVFDSHNLA 120
  121 NPPIPNMYSL HSWLGLSAVI VFSLQYVAGF VAFLAPGLRE NYRIAMMPLH IYFGLFGFVL 180
  181 AIASALMGIT EKAIFAIKTP AYSTLPPAGV LANVIGVMYV VFGALVVYLA TEPSYKRKPI 240
  241 PEDTALLNSS SVNE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	59	0.94
Transmembrane Helix	60	83	0.86
Cytoplasmic	84	92	0.90
Transmembrane Helix	93	114	0.90
Non-Cytoplasmic	115	132	0.92
Transmembrane Helix	133	155	0.92
Cytoplasmic	156	168	0.85
Transmembrane Helix	169	189	0.93
Non-Cytoplasmic	190	207	0.89
Transmembrane Helix	208	230	0.93
Cytoplasmic	231	254	0.98