YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1275-PA, CG1275-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDADVEQA TKPESGVVQV EPAIPEQPQA AVPTTISTAT TVIAVTNGEK PAAATPATTA  60
   61 TPATAEQVQP ATTIAGIELA TPTAAATSPP TGSGKANMDP ALINFKVLYV LTQLCGLTMI 120
  121 VLVATWIGQH FGGLAGTSNP GVEFNWHPLF MTIGFIYLYG NSILIYRGFR TTRKKTLKLT 180
  181 HAGIHMGAFI LTVIALKTVF DSHNLANPPI PNMYSLHSWL GLSAVIVFSL QYVAGFVAFL 240
  241 APGLRENYRI AMMPLHIYFG LFGFVLAIAS ALMGITEKAI FAIKTPAYST LPPAGVLANV 300
  301 IGVMYVVFGA LVVYLATEPS YKRKPIPEDT ALLNSSSVNE

Type	Start	End	Confidence
Cytoplasmic	1	106	0.98
Transmembrane Helix	107	128	0.93
Non-Cytoplasmic	129	145	0.92
Transmembrane Helix	146	169	0.86
Cytoplasmic	170	178	0.90
Transmembrane Helix	179	200	0.90
Non-Cytoplasmic	201	218	0.92
Transmembrane Helix	219	241	0.92
Cytoplasmic	242	254	0.85
Transmembrane Helix	255	275	0.93
Non-Cytoplasmic	276	293	0.89
Transmembrane Helix	294	316	0.93
Cytoplasmic	317	340	0.98