YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0312161, CG5...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.77
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	100	0.96
Transmembrane Helix	101	121	0.96
Cytoplasmic	122	131	0.92
Transmembrane Helix	132	154	0.84
Non-Cytoplasmic	155	169	0.74
Transmembrane Helix	170	189	0.94
Cytoplasmic	190	213	0.92
Transmembrane Helix	214	238	0.89
Non-Cytoplasmic	239	246	0.75
Transmembrane Helix	247	265	0.90
Cytoplasmic	266	275	0.70
Transmembrane Helix	276	297	0.88
Non-Cytoplasmic	298	324	0.92
Transmembrane Helix	325	344	0.92
Cytoplasmic	345	362	0.81
Transmembrane Helix	363	382	0.93
Non-Cytoplasmic	383	418	0.94
Transmembrane Helix	419	442	0.81
Cytoplasmic	443	468	0.87
Transmembrane Helix	469	489	0.93
Non-Cytoplasmic	490	497	0.70
Transmembrane Helix	498	520	0.90
Cytoplasmic	521	527	0.91
Transmembrane Helix	528	549	0.95
Non-Cytoplasmic	550	598	0.97
Transmembrane Helix	599	621	0.92
Cytoplasmic	622	683	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATQDTILK LLTLCALAHS ITALALQERS PTPGGSAPLD SSHKYLIVRG ESPSESQEHV  60
   61 EFDNAATLLL RAFKNQQIPA SAELEECSAP SHKATFSGYD YVILLGMLVI SLGIGIFYGF 120
  121 FQKGGSSSNE FLLGSEMSIF PVTLSLTTSF ITAIELLGNP SEMYFQGTQF VLIVIPMVIV 180
  181 IPVAVKIFYP IYFKMELTSC YEYLGIRFGK EIRILGAVLY VIQMCFYTAV AVLAPAIALS 240
  241 KATGLDTKIA VVLIYVVCVF YSSQGGMKAV VIADSFQAAV LAVSLVLIVG LGCFYSGNPI 300
  301 QVFQTASDHN RLEFFNMDPD PTTRHTVWSV VIGGFFYWTS LFCTNQASVQ KCMSLKSLRL 360
  361 AKIALGFAII GLIVVFLLNF YTGLMVFTHY ADCDPLTAGR ISATDQLLPY YVINTYEHIS 420
  421 SVAGIFVAGI FAASLGTVAS ALNSLSAVTC EDLLVNGMNI KISPEKGATY AKWMSLGFGI 480
  481 ASFGLVFIVE HLGGVLQATL TLNGLIGGVT LGLFVLGIAC KQANTKGAFY GGLLSLALVI 540
  541 FVGVVAQIVS VEQPALPTSI DKCDCHVNMT NIIGSLLTEP LEVIEEGGFT SWPIFRLSYM 600
  601 WYSMIGCLLT VFLGWFISLI IDFIQRRNVL KITGKDIDNP AVSEEIFKSD SQVQYTTTTV 660
  661 IGDPRELTSD EGHVNHAIRI DDE