YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24655728, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSKSLANC RAIRRYLLIF TAVSLLLLPL SLAYLVWNEQ LQKIRGFEAF NVQQQSPQQP  60
   61 QPQQQQQEQQ QQPQQHGQFP YPVVRYPVLL LNKNKNKDLT VVATGKTKNK WRYVDKDSNQ 120
  121 TLLPLIPEHA VQTLTPQEML QVEQRMDQRR ERLKDKCSAY GLDVLGHDAW HTPNTWEFLV 180
  181 NKKYHIIWCN VFKAASSSWM FNFNVLAGYS PSYLRKTKKI LLNLARERYP RVTLDENYSV 240
  241 TFIIARDPFE RLLSAYRDKM VFALPYSFHD KLGRSIVRNY RKKPSLAARA ANTKFPSFPE 300
  301 FVHWLLDQVK RGSFIDMHFV AATSFCTPCL IRFDMILKFE SLAEDQLYLI EKTGLKRVIA 360
  361 PVWRNMGKGR KTHELQQQFY AQLTRQEMLE LYEYYKYDFE LFDYDIQEYL QVARPDEAES 420
  421 PAGTKN

Type	Start	End	Confidence
Signal Peptide	1	33	0.96
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	426	0.99