YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220948346, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.93
Transmembrane Helix	51	72	0.85
Cytoplasmic	73	82	0.82
Transmembrane Helix	83	102	0.93
Non-Cytoplasmic	103	107	0.72
Transmembrane Helix	108	127	0.89
Cytoplasmic	128	146	0.96
Transmembrane Helix	147	170	0.86
Non-Cytoplasmic	171	179	0.89
Transmembrane Helix	180	200	0.89
Cytoplasmic	201	212	0.86
Transmembrane Helix	213	234	0.91
Non-Cytoplasmic	235	245	0.79
Transmembrane Helix	246	266	0.90
Cytoplasmic	267	272	0.83
Transmembrane Helix	273	294	0.89
Non-Cytoplasmic	295	314	0.90
Transmembrane Helix	315	334	0.94
Cytoplasmic	335	352	0.91
Transmembrane Helix	353	373	0.95
Non-Cytoplasmic	374	381	0.84
Transmembrane Helix	382	405	0.88
Cytoplasmic	406	449	0.96
Transmembrane Helix	450	468	0.90
Non-Cytoplasmic	469	474	0.80
Transmembrane Helix	475	494	0.81
Cytoplasmic	495	504	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRAAAEPI PHVSPSPFPN PSAVNQTLEE RLGLDLVQVY DWDWWGTLVQ SGESLLLILS  60
   61 TLWCILLARV VCQKLRLHGS ADLCYATEFL LVILPCILLV SVAVDYSGYI GLLMLVATLW 120
  121 FLRTSRALER ARTRVQFDLG GNRPMCLSIL RALTHLITAV CILAIDFGSF YRPYRKSRQF 180
  181 GAKLMDTGIG LFVFTMAMVS RRTRHWSDLR RSVIYSALPL ILLGLARTVS ILTLSYGQDA 240
  241 HEYGQHLNAF FTLGFTKFLG SLVSILARKD LHLLPLGFGL LVIHQFGLSV LGISDYVMNE 300
  301 DVERSSFLNA NREGLVSLPG FVGLFLLSIY VNRWMVAKSL LTYSEFVRKL RRLFYLVLIL 360
  361 WTSFVISAYE IGISRVTCNL GYVIWMLAIG STTLCASFGA IDFAINSVMP WDPNPWEDHE 420
  421 KGLLSGEAVV KKRGGSVVPF TISQALNKNG LTFFLVANIL TGMVNIFLRP EDRSHSESVI 480
  481 ILLVYMFLAT KLVHELLKRG IRLA