YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stet-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKRTRSFK CAVHHRDREV CSENDFQLVL NEPPLFRKMV HAVAMEILPE ERDRKYYADR  60
   61 YTCCPPPFFI ILVTLVELGF FVYHSVVTGE AAPRGPIPSD SMFIYRPDKR HEIWRFLFYM 120
  121 VLHAGWLHLG FNVAVQLVFG LPLEMVHGST RIACIYFSGV LAGSLGTSIF DPDVFLVGAS 180
  181 GGVYALLAAH LANVLLNYHQ MRYGVIKLLH ILVFVSFDFG FAIYARYAGD ELQLGSSSEF 240
  241 LAIDQAETAG AVSYVAHLAG AIAGLTIGLL VLKSFEQKLH EQLLWWIALG TYLALVVFAI 300
  301 AFNIMNGFAM FNIRVEKIRV TETIFNDFQV

Type	Start	End	Confidence
Cytoplasmic	1	61	0.97
Transmembrane Helix	62	83	0.82
Non-Cytoplasmic	84	121	0.85
Transmembrane Helix	122	141	0.90
Cytoplasmic	142	151	0.69
Transmembrane Helix	152	170	0.89
Non-Cytoplasmic	171	174	0.86
Transmembrane Helix	175	196	0.91
Cytoplasmic	197	205	0.80
Transmembrane Helix	206	228	0.89
Non-Cytoplasmic	229	249	0.97
Transmembrane Helix	250	272	0.89
Cytoplasmic	273	282	0.87
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	330	0.96