YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stet-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPGSERGSS RALEIPTSQQ NAGGSSQQET LADIEHISTI AGSLASIGSL SHTQMRYQCT  60
   61 NDAGYDTEHT SLNSDFDEAE LRRELLRDKW KLLFDMFDPE GFGEISVEEF LEALKSPEFL 120
  121 SQVPMNKREL LLERAKKAKL PTGPGYVTFQ DFVNVMSGKR TRSFKCAVHH RDREVCSEND 180
  181 FQLVLNEPPL FRKMVHAVAM EILPEERDRK YYADRYTCCP PPFFIILVTL VELGFFVYHS 240
  241 VVTGEAAPRG PIPSDSMFIY RPDKRHEIWR FLFYMVLHAG WLHLGFNVAV QLVFGLPLEM 300
  301 VHGSTRIACI YFSGVLAGSL GTSIFDPDVF LVGASGGVYA LLAAHLANVL LNYHQMRYGV 360
  361 IKLLHILVFV SFDFGFAIYA RYAGDELQLG SSSEFLAIDQ AETAGAVSYV AHLAGAIAGL 420
  421 TIGLLVLKSF EQKLHEQLLW WIALGTYLAL VVFAIAFNIM NGFAMFNIRV EKIRVTETIF 480
  481 NDFQV

Type	Start	End	Confidence
Cytoplasmic	1	216	0.92
Transmembrane Helix	217	238	0.78
Non-Cytoplasmic	239	276	0.84
Transmembrane Helix	277	296	0.90
Cytoplasmic	297	306	0.68
Transmembrane Helix	307	325	0.88
Non-Cytoplasmic	326	329	0.86
Transmembrane Helix	330	351	0.91
Cytoplasmic	352	360	0.80
Transmembrane Helix	361	383	0.89
Non-Cytoplasmic	384	404	0.97
Transmembrane Helix	405	427	0.89
Cytoplasmic	428	437	0.87
Transmembrane Helix	438	459	0.93
Non-Cytoplasmic	460	485	0.96