YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rho-PA, FBpp0305409
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLTQNVNE TKVDLGQEKE KEASQEEEHA TAAKETIIDI PAACSSSSNS SSYDTDCSTA  60
   61 SSTCCTRQGE HIYMQREAIP ATPLPESEDI GLLKYVHRQH WPWFILVISI IEIAIFAYDR 120
  121 YTMPAQNFGL PVPIPSDSVL VYRPDRRLQV WRFFSYMFLH ANWFHLGFNI VIQLFFGIPL 180
  181 EVMHGTARIG VIYMAGVFAG SLGTSVVDSE VFLVGASGGV YALLAAHLAN ITLNYAHMKS 240
  241 ASTQLGSVVI FVSCDLGYAL YTQYFDGSAF AKGPQVSYIA HLTGALAGLT IGFLVLKNFG 300
  301 HREYEQLIWW LALGVYCAFT VFAIVFNLIN TVTAQLMEEQ GEVITQHLLH DLGVS

Type	Start	End	Confidence
Cytoplasmic	1	99	0.99
Transmembrane Helix	100	118	0.94
Non-Cytoplasmic	119	158	0.91
Transmembrane Helix	159	178	0.91
Cytoplasmic	179	188	0.68
Transmembrane Helix	189	207	0.91
Non-Cytoplasmic	208	211	0.83
Transmembrane Helix	212	233	0.89
Cytoplasmic	234	242	0.76
Transmembrane Helix	243	262	0.91
Non-Cytoplasmic	263	277	0.87
Transmembrane Helix	278	296	0.97
Cytoplasmic	297	306	0.78
Transmembrane Helix	307	329	0.92
Non-Cytoplasmic	330	355	0.96