YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FucTD-PA
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIDRLRPLP VEKLLSFRRN PDLLQQHRQQ TDEMEAIPKF LPSRLLPDDE DAKVGSRRMA  60
   61 DNDEDTLRLP PPRRSPVSMR NLQRELYSPI QCMNALKVMA VVLTICLVFT TIPLLRRQTM 120
  121 QESDNLRMIL LWNEPSLVNA PAHVECGCLV TTSRSHNDKA FDAVVISADH PYSFEGLGGV 180
  181 KLHPDFYAVY AAKKPLSSTQ NPLTNFTLPP FNLTMTYRLD SQLIWTDYYF SHTNLARRLK 240
  241 WFRAPSKSFA DDMPATTVLR LESEILKKSR LAVYLVYEVN EKTLPESLYM EELRKYADLD 300
  301 AHDNCLGTDD CSHYHFMLIF ETSACPDYVP PQMSMAMDKL LVPVLIGGGN LTNLVPSHSY 360
  361 ISSQDFATPQ DLIIHLKDLA NNQLEYRRYF WWHSIYRLRK TSQPYCALCS LIQQSPGGHE 420
  421 VRQRSYSLGF INWWTKYQCP NRSTTFL

Type	Start	End	Confidence
Cytoplasmic	1	92	0.85
Transmembrane Helix	93	115	0.78
Non-Cytoplasmic	116	447	0.98