YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ru-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLSGAPSQ GRRPKNRPLI GTVEEGEMPP STVLQMPPAP LSSKSGLVLG VCCDQLMAVQ  60
   61 PVQRASGAAA TKSNSPDWGN HRAKHHEGSA APFKWIPPFF IILATLLEVL VFLWVGADPP 120
  121 EDSLLVYRPD QRLQLWRFLS YALLHASWLH LGYNVLTQLL FGVPLELVHG SLRTGVIYMA 180
  181 GVLAGSLGTS VVDSEVFLVG ASGGVYALLA AQLASLLLNF GQMRHGVIQL MAVILFVFCD 240
  241 LGYALYSREL AMHQLQTRPS VSYIAHMTGA LAGISVGLLL LRQLDGGLRP RPLRWLALGV 300
  301 WCIFSAFGIA FNLVNTVTAQ LLAEEEGQVI RQHLMNDLGM G

Type	Start	End	Confidence
Cytoplasmic	1	94	0.96
Transmembrane Helix	95	117	0.90
Non-Cytoplasmic	118	140	0.89
Transmembrane Helix	141	162	0.82
Cytoplasmic	163	171	0.70
Transmembrane Helix	172	192	0.86
Non-Cytoplasmic	193	196	0.83
Transmembrane Helix	197	218	0.91
Cytoplasmic	219	225	0.79
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	262	0.88
Transmembrane Helix	263	281	0.97
Cytoplasmic	282	292	0.82
Transmembrane Helix	293	314	0.88
Non-Cytoplasmic	315	341	0.91