YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3419-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.95
Transmembrane Helix	17	38	0.88
Non-Cytoplasmic	39	107	0.82
Transmembrane Helix	108	129	0.69
Cytoplasmic	130	139	0.79
Transmembrane Helix	140	162	0.82
Non-Cytoplasmic	163	230	0.72
Transmembrane Helix	231	255	0.81
Cytoplasmic	256	271	0.75
Transmembrane Helix	272	294	0.89
Non-Cytoplasmic	295	345	0.92
Transmembrane Helix	346	368	0.85
Cytoplasmic	369	377	0.85
Transmembrane Helix	378	399	0.91
Non-Cytoplasmic	400	405	0.84
Transmembrane Helix	406	425	0.81
Cytoplasmic	426	456	0.84
Transmembrane Helix	457	479	0.84
Non-Cytoplasmic	480	500	0.79
Transmembrane Helix	501	524	0.70
Cytoplasmic	525	696	0.98
Transmembrane Helix	697	720	0.89
Non-Cytoplasmic	721	732	0.76
Transmembrane Helix	733	754	0.74
Cytoplasmic	755	765	0.53
Transmembrane Helix	766	789	0.69
Non-Cytoplasmic	790	803	0.68
Transmembrane Helix	804	824	0.80
Cytoplasmic	825	830	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTTLWQNR SPGDRHLSTY FCFAAVRLLL VFVPQLGYVH PDEFFQSVEV MTGDHFRLEH  60
   61 TRTWEFNNSL PVRSIVLPFA LLRIPWSFYE FVAECLKAWW QLELLGTYAY VVFPRLIYTL 120
  121 ISFSNDYCLF RICRLYGLRF EIRLLAMGSS WILLVFGTRT FSNSLEMAMC SWLLCLVSEC 180
  181 MLRTNTVVYK KEFLEEKYDK AESISERVRI WKLKNSLPAH NLQHLMAMST ICVAGVFNRP 240
  241 TFLLFGAPMV FFWLLRGMGT RSITFRDFNL RIALFCLCAL PALVLFIFCD SLYYQHLTLG 300
  301 ELHMMHLSID NFVFTPWNFI KANLDSAQTA SHGVHPCYVH LMVNMPMLFN VLALASLGAF 360
  361 AQLLLRFFRA EYQVLPRFQS IVSLMSGAIF VPLFFLSLIN HQEPRFLLPV TFPLILLHAP 420
  421 KLITGFSAKY PFQKDHPLLR LFYDKLLSSK ASGPYLLKIW YVSNVALTLF FGFIHQAGVY 480
  481 PLAADISHVI ATKPAATHVH LITSHIYSLP LHLINIPSSR VLHFNRLTHQ RYRRPRDFYM 540
  541 YEYGGLPLDS LLQKVKLISG SCEVKKSGPS RRRYKLYLAI PASLSADLHE ALVHSNASSY 600
  601 LNFELLKVFY PHLSTEAFPH LQGRHPCDVD APHWAHDDLR GTCSAEQLPA FSFAYLNKQF 660
  661 SSFVHQLGLA LYEIDVTRNK PRYVSLAYSG CSPTKGYFLL FIQFLICLAL CIAAAQAGFI 720
  721 ASPVTTYAAA PAYAASYAAP VAYSAPVATY AAAAPAYSTY AAAAPAYSTY AAAAPAYSTY 780
  781 AAAAPAYTAS VYSAPAYTAP VTTYAAGAAY AAPVTTYSAP AIVSPILKKK