YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3209-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAVLLDIFW IPIGGFLSFL IFISAINKSI GVRKAYVNLL LRIFEYGRVS IETASKENQH  60
   61 IQNPKTDDKQ GVQLVDDADS KEGTNGATLI TRDAVLLPQP QEPAPEKPVS STKDEINFDF 120
  121 EKCLDYVKSG VEAIIEDDVT SRFEAEELKS WNMLTRTNRH YEFISWKITS IWVFGFFIRY 180
  181 VILMPLRVLV CFVGVVWLTV CTAAVGYLKD GPFKRDLVHK VLGMCFGVLS SAISAVITYH 240
  241 NEDNRPSSGI CVANHTSPID VLVLMCDSTY SLIGQRHGGF LGVLQRALAR ASPHIWFERG 300
  301 EAKDRHLVAE RLKQHVSDPN NPPILIFPEG TCINNTSVMQ FKKGSFEVGG VIYPVAIKYD 360
  361 PRFGDAFWNS AKYSMMQYLY MMMTSWAIVC DVWYLPPMYR QEGESAIDFA NRVKSVIAKQ 420
  421 GGLIDLVWDG QLKRMKPKKE WREIQQVEFA NRLKSDST

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	26	0.96
Cytoplasmic	27	162	0.98
Transmembrane Helix	163	182	0.94
Non-Cytoplasmic	183	187	0.77
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	216	0.90
Transmembrane Helix	217	239	0.89
Non-Cytoplasmic	240	458	0.77