YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3803-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLLQKRTN LIKLVVPGPR LHQTIAQTAI KEIPVIKPIS TPKSDKTVGR WFLGVSGMVF  60
   61 VAVGLGGVTR LTESGLSMVT WKLTGERMPR TQEEWVQEFN LYQQYPEYKL KNVNMTVEEF 120
  121 KFIFMMEYMH RMWGRAIGGF FLLPAVYFWR KGYFCAKTKK SVLLLGTLIG LQGLMGWYMV 180
  181 KSGLEDRFQD PNDVPRVSQY RLASHLAAAF VLYSLSLSKA MSLLIPTNTF VIQAKKAFNI 240
  241 KGLTHLTKAM VLLTAISGAF VAGLDAGLVY NSFPKMGDKW IPDDMWTFAP IQKNITENPT 300
  301 TVQFNHRILG ISTVTLTTAL WLVTRRMQLP KRANWAINAV VAMAWTQATL GVTTLLNYVP 360
  361 VPLATAHQSG SLILLSFALW LSHEVRLLKY LPK

Type	Start	End	Confidence
Cytoplasmic	1	47	0.99
Transmembrane Helix	48	71	0.88
Non-Cytoplasmic	72	131	0.98
Transmembrane Helix	132	150	0.95
Cytoplasmic	151	160	0.86
Transmembrane Helix	161	180	0.94
Non-Cytoplasmic	181	205	0.89
Transmembrane Helix	206	225	0.86
Cytoplasmic	226	245	0.79
Transmembrane Helix	246	268	0.86
Non-Cytoplasmic	269	303	0.96
Transmembrane Helix	304	324	0.90
Cytoplasmic	325	334	0.87
Transmembrane Helix	335	356	0.92
Non-Cytoplasmic	357	363	0.80
Transmembrane Helix	364	383	0.92
Cytoplasmic	384	393	0.90