YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5594-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.94
Transmembrane Helix	110	130	0.86
Non-Cytoplasmic	131	137	0.56
Transmembrane Helix	138	171	0.74
Cytoplasmic	172	187	0.60
Transmembrane Helix	188	220	0.71
Non-Cytoplasmic	221	239	0.66
Transmembrane Helix	240	259	0.93
Cytoplasmic	260	264	0.57
Transmembrane Helix	265	285	0.92
Non-Cytoplasmic	286	390	0.72
Transmembrane Helix	391	412	0.82
Cytoplasmic	413	425	0.77
Transmembrane Helix	426	449	0.85
Non-Cytoplasmic	450	479	0.82
Transmembrane Helix	480	500	0.87
Cytoplasmic	501	531	0.88
Transmembrane Helix	532	549	0.92
Non-Cytoplasmic	550	555	0.65
Transmembrane Helix	556	577	0.89
Cytoplasmic	578	587	0.85
Transmembrane Helix	588	607	0.87
Non-Cytoplasmic	608	609	0.45
Transmembrane Helix	610	627	0.67
Cytoplasmic	628	785	0.56
Transmembrane Helix	786	800	0.53
Non-Cytoplasmic	801	821	0.74
Transmembrane Helix	822	838	0.60
Cytoplasmic	839	1043	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDRFQVTKA DEDTALDYNQ DESASGKLLG DIHDETLGEN YGSYDDSGDI HRAEENQKSS  60
   61 IDPNLYLYDD DLETRPHIST FISSIANYEN TIPAATDPDA KPAAPSARMG TLIGVFLPCI 120
  121 QNIFGVILFI RLTWVVGTAG AVCGFLIVLT CCCVTMLTAI SMSAIATNGV VPAGGSYFMI 180
  181 SRSLGPEFGG AVGMLFYTGT TLAAAMYIVG AVEIVLTYMA PWASIFGDFT KDADAMYNNF 240
  241 RVYGTLLLIF MGLIVFLGVK FVNKFATVAL ACVILSIIAV YVGIFDNIHG NEKLYMCVLG 300
  301 KRLLKDIPLE NCTKEDSFLR DIYCPDGKCE EYYLANNVTK VKGIKGLASG VFYDNIFPSF 360
  361 LEKGQFISYG KSAIDIENTS GESYNQIMAD ITTSFTLLIG IFFPSVTGIM AGSNRSGDLA 420
  421 DAQKSIPIGT ICAILTTSTV YLSSVMFFAG TVDNLLLRDK FGQSIGGKLV VANIAWPNQW 480
  481 VILIGSFLST LGAGLQSLTG APRLLQAIAR DEIIPFLAPF AKSSKRGEPT RALLLTIVIC 540
  541 QCGILLGNVD LLAPLLSMFF LMCYGFVNLA CAVQTLLRTP NWRPRFKFYH WSLSLIGLTL 600
  601 CISVMIMTSW YFALIAMGMA IIIYKYIEYR GAEKEWGDGI RGMALTAARY SLLRLEEGPP 660
  661 HTKNWRPQIL VLSKLNDNLL PKYRKIFSFA TQLKAGKGLT ICVSVIKGDH TKITNKAVDA 720
  721 KATLRKYMTD EKVKGFCDVL VAQQIGEGLS SVIQTIGLGG MKPNTVIIGW PYSWRQEGRN 780
  781 SWKTFIQTVR TVAACHMALM VPKGINFYPE SNHKIGGNID IWWIVHDGGL LMLLPFLLKQ 840
  841 HRTWRNCKLR IFTVAQIEDN SIQMKKDLKT FLYHLRIEAD VEVVEMNNSD ISAYTYERTL 900
  901 MMEQRNQMLR ALGLNKKENS KVDSQNDEKR NSIDLDGPEN ADTPETTSNK DESTEKADGD 960
  961 FKSSVKPDEF NVRRMHTAIK LNEVIVEKSQ DAQLVIMNLP GPPREVRAER ERNYMEFLEV1020
 1021 LTEGLEKVLM VRGGGREVIT IYS