YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309940, FBp...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGPSSQISK ILLTLLFLLI IFYVFMDVEL YLRIHNYAIE RNYHTNVSLP ASVVGPSTSE  60
   61 SGSGSIGGSS SSSSSSSSST STKLPTAGDR QPSYEDHTWI SCDINPLCHV TVKAILLDHT 120
  121 NHYLFAPLAT MFDNVIGFSR STFITPNMIS FFHVGVACLA GKLVASDSLG YRRLGVLLFQ 180
  181 IRTFLDDLDG HVARVRKHIR GERSEIGTSG YYVDGLCDGL GCIALLLGIF FYLKNNPPRR 240
  241 GYSIIPMSDS KLPEPTMMIP KMKATTRKVA KNVISFTGQL LLSSTAWNRY IAVYQNMLER 300
  301 EDVSGNQSHC QDYVFKSTWF FCVAWMWRIV NVHALLHCVL LSIFCDKLWD FLRAIRYSGY 360
  361 IILLVAICLT EMHILEAQNY IFNSTACSNI SL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.45
Transmembrane Helix	8	31	0.70
Cytoplasmic	32	142	0.48
Transmembrane Helix	143	165	0.62
Non-Cytoplasmic	166	210	0.68
Transmembrane Helix	211	233	0.79
Cytoplasmic	234	268	0.76
Transmembrane Helix	269	287	0.66
Non-Cytoplasmic	288	323	0.86
Transmembrane Helix	324	345	0.85
Cytoplasmic	346	356	0.74
Transmembrane Helix	357	375	0.92
Non-Cytoplasmic	376	392	0.89