YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24762405, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.30
Transmembrane Helix	10	38	0.55
Cytoplasmic	39	63	0.53
Transmembrane Helix	64	83	0.75
Non-Cytoplasmic	84	92	0.60
Transmembrane Helix	93	117	0.81
Cytoplasmic	118	137	0.63
Transmembrane Helix	138	164	0.81
Non-Cytoplasmic	165	252	0.90
Transmembrane Helix	253	273	0.92
Cytoplasmic	274	281	0.81
Transmembrane Helix	282	304	0.86
Non-Cytoplasmic	305	330	0.75
Transmembrane Helix	331	349	0.86
Cytoplasmic	350	376	0.90
Transmembrane Helix	377	399	0.93
Non-Cytoplasmic	400	433	0.91
Transmembrane Helix	434	455	0.87
Cytoplasmic	456	475	0.86
Transmembrane Helix	476	495	0.93
Non-Cytoplasmic	496	508	0.85
Transmembrane Helix	509	530	0.92
Cytoplasmic	531	548	0.91
Transmembrane Helix	549	571	0.91
Non-Cytoplasmic	572	591	0.88
Transmembrane Helix	592	610	0.96
Cytoplasmic	611	788	0.97
Transmembrane Helix	789	810	0.60
Non-Cytoplasmic	811	817	0.56
Transmembrane Helix	818	839	0.71
Cytoplasmic	840	1201	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSKSGSA GVGGVGGGGG VVCPSTAISG CASGTALIQL DATGPGAGGA GESEHERGTW  60
   61 TGRFDFLLSL LGYSVGLGNV WRFPYLCYNN GGGAFLIPFT IMLVIAGLPL MFMELSFGQY 120
  121 AALGPVAVYR RFCPLFRGLG TGMILVSAIV MLYYNLIIAW TIFYMFASFA PVLPWQNCEP 180
  181 AWSTKYCFSY AQADQCEATN GTYYLRTCHN ATSAAENNIT TLALGALKRP PAEEYFNNFV 240
  241 LGLSKGIEET GSIKLSLAAC LFLAWTIVFL CLCKGVQSSG KVVYFTALFP YVVLVILFVR 300
  301 GVTLPGASTG ILFYLTPDWK QLANAQVWGD AAVQIFFALS PAWGGLITLS SYNKFSNNCY 360
  361 NCGTFELSTK SNSRDSLIVA FCNIATSFFA GLVIFSIIGF LAHELNVDVE KVVDQGAGLA 420
  421 FIVYPEVVTR LPVSPVWAVL FFVMLLTLGL DSQFALMETV TTAILDRFPN LRQYKIWVVL 480
  481 SVAIFGYIGG LGFTTNSGMY WLQLMDKYAA NWSVLLIAIS ECILIAWIYG SQRFLNDIQG 540
  541 MIGKRSWFWN FFWGIMWRYI TPATLLFILF FNWVEYKPAK YGHYVYPMWA DAVGWIVGLL 600
  601 PVLVIFLVAF QEIWRAPMSL SFRDRIKHLL QPTAEWGPAG RPCVNLHAER YQSQNYDGVT 660
  661 NTKILIEEEA SPKQAANKKD RQLTLDVDVD VECLPLATVG KRPGAPKSMG KQGSSGNLQT 720
  721 NAKNGTHKSP TTEISPSKQP LIPSEKDNKS ANIKVLAAGT QSSGRECTTM STFAGGGEKK 780
  781 STKVNLATGA TSAAAPLASS NIATAATVAA ATKSPPAAGV APTTLVGIAA TGTTVAAAAN 840
  841 GKATLKTTIS SGAVAATAAG GNKAASVAAA TATVAAGKTP AAAMALNVAA SVKVSQTDKT 900
  901 APLKTTISAS VATAPGGTKA STAPSVATAA VVSVSSGATV PAAASKAAAP LKATAPPPSL 960
  961 AAVNATQAAK STPVAAASAL VASAPPAKST SASVAKTNTN AGSKPTATLS TCKSDAPAAA1020
 1021 ASVGVTNGKV TPSGGATSTA QPAVNQKATA AAAAQKSQGA TATATPTKTA LNQKTIVPSA1080
 1081 GSGKGDVPSS RSTDTPPPAK GAASSNISAK STKAGKTQAN ETSPTKSAVK PIKAGSTSPT1140
 1141 KAVVSKPGAS AAKTAAASAA TATATAAGSS SSNKKAATST AATLGSQAKT KGNASGAGTK1200
 1201 K