YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4797-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.59
Transmembrane Helix	58	76	0.93
Non-Cytoplasmic	77	82	0.76
Transmembrane Helix	83	105	0.92
Cytoplasmic	106	114	0.81
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	143	0.67
Transmembrane Helix	144	167	0.78
Cytoplasmic	168	227	0.97
Transmembrane Helix	228	251	0.90
Non-Cytoplasmic	252	265	0.95
Transmembrane Helix	266	288	0.93
Cytoplasmic	289	293	0.89
Transmembrane Helix	294	314	0.94
Non-Cytoplasmic	315	324	0.87
Transmembrane Helix	325	350	0.81
Cytoplasmic	351	359	0.83
Transmembrane Helix	360	378	0.89
Non-Cytoplasmic	379	391	0.67
Transmembrane Helix	392	411	0.96
Cytoplasmic	412	460	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIGFSAILL PQLMDNNSTE IPIDVETGSW IASVHSLATP FGSLLSGPLA DYLGRRRTLI  60
   61 LSVIPLLLGW STLAIAKSIK VVIFARFLCG FATGILGGPG QVYIAETAEP NLRSLLIGAP 120
  121 YVAYSSGILM VYSLGSMMYW RSVAWCANVL PLLSMVSISF IPETPAWLLR NGHEKRALQA 180
  181 LSFLRGSEIS AQKELNDMKQ RLAKERVTTK TNENIFQLCC QRVAIKPLVI VIVFSLLQMF 240
  241 SGTFIVIFYA VDMISEFGAE FDSKQAAIAT AVVRVICCMV FCVVLIFVRR RRIMIVSGIG 300
  301 SGLFCLVLSV YQYARFDQPK MSYDVFVGAG CLLGYIIFNT ALMVMPGIMI GELFPARIRG 360
  361 RTAGGVFASM NVALFIFAKK FPALQAMLKM RGVFLVFGVS SFLLTAFMCL FQPETKGRSL 420
  421 EHIEDYFNGD NWLWFRRDRG YKTVNLQPLE PLKDTRGLEA