YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4019-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEIRCCKV FKMKGSTLDK ISAFLGELIG TGILVFLGCM GCVKTDLFPN NHLQIVLNFG  60
   61 FAVLIAIQCF GCVSGAHLNP AVTVAAYIYE MVTLRMAFAY FAAQMLGAFI GYGLLMVLLP 120
  121 SPTLTVGAGL CVTLPHTSVT TGQALGIEFV ITSILVIVCC GVWDPRNSKF HDSVGIRFGL 180
  181 AIACLACAAG PFTGGSMNPA RSFAPALWNK HFESNWIYWL APLSSSAITA YAYKVVFRRE 240
  241 VVEAEITSNE KLRQLEDVQL S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	54	0.86
Transmembrane Helix	55	78	0.83
Cytoplasmic	79	96	0.74
Transmembrane Helix	97	119	0.88
Non-Cytoplasmic	120	143	0.85
Transmembrane Helix	144	163	0.96
Cytoplasmic	164	173	0.89
Transmembrane Helix	174	195	0.93
Non-Cytoplasmic	196	215	0.93
Transmembrane Helix	216	237	0.89
Cytoplasmic	238	261	0.97