YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4019-PD, CG401...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGSTLDKIS AFLGELIGTG ILVFLGCMGC VKTDLFPNNH LQIVLNFGFA VLIAIQCFGC  60
   61 VSGAHLNPAV TVAAYIYEMV TLRMAFAYFA AQMLGAFIGY GLLMVLLPSP TLTVGAGLCV 120
  121 TLPHTSVTTG QALGIEFVIT SILVIVCCGV WDPRNSKFHD SVGIRFGLAI ACLACAAGPF 180
  181 TGGSMNPARS FAPALWNKHF ESNWIYWLAP LSSSAITAYA YKVVFRREVV EAEITSNEKL 240
  241 RQLEDVQLS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	42	0.78
Transmembrane Helix	43	66	0.84
Cytoplasmic	67	84	0.71
Transmembrane Helix	85	107	0.87
Non-Cytoplasmic	108	131	0.83
Transmembrane Helix	132	151	0.96
Cytoplasmic	152	161	0.89
Transmembrane Helix	162	183	0.93
Non-Cytoplasmic	184	203	0.93
Transmembrane Helix	204	225	0.89
Cytoplasmic	226	249	0.97