YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17662-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQKQKSQE SNPNARWRLE GHQRSAIACF FGELAATAVF VFIACMGCVE TPLFQNSHFR  60
   61 SGLTFGLAIL IAIQCFGSVS GAHLNPAITL AAWLYGAIGW IRAIAYFVAQ AAGALIGYGL 120
  121 LVAVLPGNSI KGVDNPSGVC VTILAPGISV LQGVFIEFLI TCCLVMVACS VWDPRNAKLQ 180
  181 DSVPVRFGLT VSCLILTAVG ISGLFTGASM NPTRSLGPAV WNDSWAHHWI YWVGPLVAGA 240
  241 VTSLIYRMAF KGDEEIDLRT SDAKIRMIGE VIVQ

Type	Start	End	Confidence
Cytoplasmic	1	25	0.93
Transmembrane Helix	26	48	0.90
Non-Cytoplasmic	49	62	0.82
Transmembrane Helix	63	84	0.88
Cytoplasmic	85	102	0.66
Transmembrane Helix	103	125	0.83
Non-Cytoplasmic	126	150	0.85
Transmembrane Helix	151	172	0.89
Cytoplasmic	173	186	0.84
Transmembrane Helix	187	208	0.93
Non-Cytoplasmic	209	227	0.93
Transmembrane Helix	228	250	0.90
Cytoplasmic	251	274	0.99