YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr59f-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSATKGAK LKNSPRERLS SFNPQYAERY KELYRTLFWL LLISVLANTA PITILPGCPN  60
   61 RFYRLVHLSW MILWYGLFVL GSYWEFVLVT TQRVSLDRYL NAIESAIYVV HIFSIMLLTW 120
  121 QCRNWAPKLM TNIVTSDLNR AYTIDCNRTK RFIRLQLFLV GIFACLAIFF NIWTHKFVVY 180
  181 RSILSINSYV MPNIISSISF AQYYLLLQGI AWRQRRLTEG LERELTHLHS PRISEVQKIR 240
  241 MHHANLIDFT KAVNRTFQYS ILLLFVGCFL NFNLVLFLVY QGIENPSMAD FTKWVCMLLW 300
  301 LAMHVGKVCS ILHFNQSIQN EHSTCLTLLS RVSYARKDIQ DTITHFIIQM RTNVRQHVVC 360
  361 GVINLDLKFL TTLLVASADF FIFLLQYDVT YEALSKSVQG NVTRYK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.61
Transmembrane Helix	36	58	0.83
Non-Cytoplasmic	59	65	0.50
Transmembrane Helix	66	88	0.84
Cytoplasmic	89	154	0.63
Transmembrane Helix	155	175	0.91
Non-Cytoplasmic	176	187	0.70
Transmembrane Helix	188	207	0.90
Cytoplasmic	208	258	0.87
Transmembrane Helix	259	280	0.92
Non-Cytoplasmic	281	290	0.74
Transmembrane Helix	291	311	0.75
Cytoplasmic	312	406	0.67