YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or59c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFFFKRLQ TAPLDQEVSS LDASDYYYRI AFFLGWTPPK GALLRWIYSL WTLTTMWLGI  60
   61 VYLPLGLSLT YVKHFDRFTP TEFLTSLQVD INCIGNVIKS CVTYSQMWRF RRMNELISSL 120
  121 DKRCVTTTQR RIFHKMVARV NLIVILFLST YLGFCFLTLF TSVFAGKAPW QLYNPLVDWR 180
  181 KGHWQLWIAS ILEYCVVSIG TMQELMSDTY AIVFISLFRC HLAILRDRIA NLRQDPKLSE 240
  241 MEHYEQMVAC IQDHRTIIQC SQIIRPILSI TIFAQFMLVG IDLGLAAISI LFFPNTIWTI 300
  301 MANVSFIVAI CTESFPCCML CEHLIEDSVH VSNALFHSNW ITADRSYKSA VLYFLHRAQQ 360
  361 PIQFTAGSIF PISVQSNIAV AKFAFTIITI VNQMNLGEKF FSDRSNGDIN P

Type	Start	End	Confidence
Cytoplasmic	1	45	0.66
Transmembrane Helix	46	69	0.81
Non-Cytoplasmic	70	83	0.56
Transmembrane Helix	84	103	0.46
Cytoplasmic	104	139	0.83
Transmembrane Helix	140	164	0.90
Non-Cytoplasmic	165	205	0.62
Transmembrane Helix	206	223	0.53
Cytoplasmic	224	270	0.89
Transmembrane Helix	271	293	0.86
Non-Cytoplasmic	294	298	0.65
Transmembrane Helix	299	320	0.56
Cytoplasmic	321	411	0.62