YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or59b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFKLIKPA PLTEKVQSRQ GNIYLYRAMW LIGWIPPKEG VLRYVYLFWT CVPFAFGVFY  60
   61 LPVGFIISYV QEFKNFTPGE FLTSLQVCIN VYGASVKSTI TYLFLWRLRK TEILLDSLDK 120
  121 RLANDSDRER IHNMVARCNY AFLIYSFIYC GYAGSTFLSY ALSGRPPWSV YNPFIDWRDG 180
  181 MGSLWIQAIF EYITMSFAVL QDQLSDTYPL MFTIMFRAHM EVLKDHVRSL RMDPERSEAD 240
  241 NYQDLVNCVL DHKTILKCCD MIRPMISRTI FVQFALIGSV LGLTLVNVFF FSNFWKGVAS 300
  301 LLFVITILLQ TFPFCYTCNM LIDDAQDLSN EIFQSNWVDA EPRYKATLVL FMHHVQQPII 360
  361 FIAGGIFPIS MNSNITVAKF AFSIITIVRQ MNLAEQFQ

Type	Start	End	Confidence
Cytoplasmic	1	44	0.91
Transmembrane Helix	45	67	0.90
Non-Cytoplasmic	68	81	0.83
Transmembrane Helix	82	105	0.77
Cytoplasmic	106	139	0.92
Transmembrane Helix	140	162	0.90
Non-Cytoplasmic	163	182	0.87
Transmembrane Helix	183	201	0.78
Cytoplasmic	202	269	0.85
Transmembrane Helix	270	291	0.94
Non-Cytoplasmic	292	297	0.72
Transmembrane Helix	298	318	0.70
Cytoplasmic	319	358	0.57
Transmembrane Helix	359	382	0.67
Non-Cytoplasmic	383	398	0.35