YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr59c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLVKTILL IAYWYGLAVG VSNFEVDWLT GEAIATRRTT IYAAVHNASL ITLLILFNLG  60
   61 NNSLKSEFIS ARYLHEYFFM LMTAVRISAV LLSLITRWYQ RSRFIRIWNQ ILALVRDRPQ 120
  121 VVRGRWYRRS IILKFVFCVL SDSLHTISDV SAQRKRITAD LIVKLSLLAT LTTIFNMIVC 180
  181 QYYLAMVQVI GLYKILLQDL RCLVRQAECI CSIRNRRGGV YSIQCCSLAD QLDLIAERHY 240
  241 FLKDRLDEMS DLFQIQSLSM SLVYFFSTMG SIYFSVCSIL YSSTGFGSTY WGLLLIVLST 300
  301 ASFYMDNWLS VNIGFHIRDQ QDELFRVLAD RTLFYRELDN RLEAAFENFQ LQLASNRHEF 360
  361 YVMGLFKMER GRLIAMLSSV ITHTMVLVQW EIQNDES

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.55
Transmembrane Helix	8	29	0.56
Cytoplasmic	30	38	0.86
Transmembrane Helix	39	60	0.87
Non-Cytoplasmic	61	76	0.88
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	130	0.93
Transmembrane Helix	131	148	0.53
Non-Cytoplasmic	149	161	0.51
Transmembrane Helix	162	185	0.68
Cytoplasmic	186	261	0.70
Transmembrane Helix	262	282	0.88
Non-Cytoplasmic	283	288	0.59
Transmembrane Helix	289	308	0.87
Cytoplasmic	309	372	0.79
Transmembrane Helix	373	392	0.71
Non-Cytoplasmic	393	397	0.71