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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nahoda-PA, nahoda-PB
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQSTRHSP FAWTARALLL LATWCCYLGY LGSEAHVALT YPPARKFDLD FLDNARTKAP  60
   61 CGMPKGSIRT SLLSGTQFNV TWHLAYAHKG GFRLQLLDAL DRPVLDLTPH VNNSEFVSTD 120
  121 VTAQSYQVKI PNDFECYNCT LRLLRQADEW TTSYRFWSCA DVDIKLRKDF KETCSGNGKY 180
  181 FPSRCKCDKN FYGPQCQYKD ECSADSDCGV QGKCVELGGT SLPKKQCYCN FGWFGIGCNK 240
  241 RSPYKSTSLD LSSYSKKELS PDYHVYWRLL EEQKEIEMVL KVNGTSWVGL GWRPRGMTPE 300
  301 CKNFPLIRDI GDLTTTLEAS VPEPKSEPEP KSEPEPKSEP EPKSEPEPKS EPEPKSEPEP 360
  361 KSEPEPKSEP EPKSEPEPKS EPEPKSEPEP KSEPEPKSEP EPKSEPEPKS EPEPKSEPEP 420
  421 KSEPQPKQLA ELRAAPEPQS EPEPKSEPEP KSEPEPKSEP EPKSEPEPKS EPEPKSEPEP 480
  481 KSEPEPKSEP EPTSEPEPKS APEPKSEPEP TSEPEPTSKP EPTSEPEPKS EPEPKSEPEA 540
  541 QSSKSKRVAG DFAKKGVSSV STSVSYRVST KSDRQRREAD SPKYRLNPYT PRHDFNGMDC 600
  601 TDIVIGAARG MASRVGDYYS RDRSTPHTDE FFGGKSNLAL GTGFEENGVT TIIFRKKLVA 660
  661 NEPTDHTLDD ALTHVIWAKG QEPEAYVHVP ASGLETQIAT VKNFYQQDEL KYHGHQMQRG 720
  721 VTQINFFEKE KSATSTDRND LGTNVLDNDC YGHWKYPSNC SPQEHTCEYY ASWETVGKGD 780
  781 EMRWHIETSN TQTWTGIGFS DDQRMSQTDA IIGWVDGRSG RPFLMDTWVL GYAPPKLDDR 840
  841 QDIYNASGRI EKGVTILEFN RKRVSNDEQD LSFTDDHCLY LFFPVLGGAF NVVNKKIRKH 900
  901 EQVPPISSQR VCIKSCGKEL ESVFVGTSTP APSRLVYAVA VKLMNLGESY EAPKPGTVEF 960
  961 NNLAATISDS FNGILSPLTG YYKTEILGFE KEGSTMVAKV QAMFDKADVE KKHALETNEV1020
 1021 DKTSEAAAQK NADVIRSALK DQVATGRVGS LTVDPQFLDF EALEYKSSSE PNAKETLLSF1080
 1081 FDLSETRLYI VLGLIAALVL IALIQAFCTI WKTSRKSKNT KEKLIQNSPW KEFASNTNYA1140
 1141 FDPYGETEEK NITNSSSGKE KARNRHQSTT SSQQTTLPMS HSPTSKSQMY YESPNGQGKS1200
 1201 SNGNGSRGNG RATQESSVGG APYSRSSYAE RAYSLPRQAH QYQQSPASMQ PSGYYTHDRR1260
 1261 AARQGSRDRE REREREEERR QRQDRDRDSG YDRSRDDPRQ NGGSDTPDFY FMPSQRKYSG1320
 1321 EVVRVYVDYN KDPKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle