YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gom-PA
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFLIATKE RLQRGLRFGQ MLIHNTVSQR MAAKATPPGS AKAVKATPPP PPSTKPPPKC  60
   61 PGGDKNMKRK PGYFASGGQH AVLSDCPKPE GDFMKAWSAK NSRYNLILVS GILAAGGTLG 120
  121 FALSSGVLCL NWTIPEYPYN EDEMEEFEIE EERRREEKEA REERHQDAVE ARELGIRRRR 180
  181 AKEAMEREVD LMQRDMDGGI TDAELDELQR LAAEREAFEL WEKDELKRLE EQEKEREKIR 240
  241 KEKAKVKAER DKEREKKRKE KEAQLEKEEA EREKAREKAR KEREKAEKEK QKEKEKADKE 300
  301 ARKAG

Type	Start	End	Confidence
Cytoplasmic	1	103	0.92
Transmembrane Helix	104	126	0.85
Non-Cytoplasmic	127	305	0.98