YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9308-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAIVLVLV LFQAACGFIV TLDAHETMCF YDHANVSDKV TVSFEVMEGG FKDVGVEIAG  60
   61 PDDDRLHHSK QDTMGSFTFT AMKEGRYQLC FDNKMSTMTP KILMFQFHVA RAIEFYMDSS 120
  121 KRVDDVIEQA TVQSMINQLS AKLGAVKMEQ EYMHFRYRGH LEVSDMVELR VLAWSIFGPM 180
  181 MLIITAVLEV YYLKHFFEVK RVV

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	170	0.99
Transmembrane Helix	171	193	0.74
Cytoplasmic	194	203	0.77