YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21645464, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKGESKCH RKGKTKRPVK REENPPHRRF KCQLAQRQKS RTSQSLSNKS SCRAEQNVRN  60
   61 TTTRVKLCKS LDPKTNRKFF TAFFSLLCLV RILDYRYWSY SKMERFGIPR GKRPRVQVSL 120
  121 DDKERAIARI RGGETKAGIS RELGVPESTV RGWVKRAEQR LARETTSQTG SANYSTILAM 180
  181 TLAKPQVTIS TKSSASSVIS KSSYSSPPLD LKPLKQPQKR NINGHPVTCT QDPVEDSAAT 240
  241 SIPIPVPIPV PLPVPPMVSP DSEQQMSAWL HIFNAGILNF TLIASAAVLQ ARSRGLADRL 300
  301 PLWQIITDFV DEAERNVNAN GGWYLEGQPA TGHMSARQRP VRVPTKVHSY RRNLKAPPAH 360
  361 ITAEDDEDSY TDADVPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	267	0.90
Transmembrane Helix	268	289	0.81
Cytoplasmic	290	377	0.79