YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LBR-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	307	0.84
Transmembrane Helix	308	330	0.88
Non-Cytoplasmic	331	362	0.85
Transmembrane Helix	363	383	0.89
Cytoplasmic	384	394	0.77
Transmembrane Helix	395	414	0.92
Non-Cytoplasmic	415	424	0.86
Transmembrane Helix	425	447	0.93
Cytoplasmic	448	492	0.97
Transmembrane Helix	493	513	0.87
Non-Cytoplasmic	514	543	0.88
Transmembrane Helix	544	562	0.92
Cytoplasmic	563	579	0.74
Transmembrane Helix	580	600	0.79
Non-Cytoplasmic	601	607	0.80
Transmembrane Helix	608	628	0.90
Cytoplasmic	629	665	0.82
Transmembrane Helix	666	685	0.65
Non-Cytoplasmic	686	691	0.57
Transmembrane Helix	692	711	0.86
Cytoplasmic	712	741	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHSPSTTTD HIHFAARFFD RNSYTMDRRL RRPRRTEDVS SGPLLAQSKQ PSLLPVTRRT  60
   61 GSVTAAGATA TATATAGPAT RTRASPSRNK VVAPPSPDLG PRTRRSSRPR SSVGPLTGSG 120
  121 SGSSLPIKAA IKARTPIPEV SEVSSPIRLS TSNLPMTLTT NTSSGAPNKA FNTSSVNSGN 180
  181 SFSRTTTSST TTTTERIEIR AEGDGEVDTD SIRKRITERL RRSVSKTISN LAGTPVTNTE 240
  241 EGSRYSRSVS RSVYDDEKSS KRSYSTGEED IDEEDELEED QFRSFNVTRK SATPAEISCR 300
  301 QLKAPREFGG WLGAFLFLLL LPTAVYYLTW SCTARNACQF KHLNLGILLD VNYLTRQVFQ 360
  361 PRVVGAFAAY QVVVFLLVAL LPGRRVHLTR ETYKFNCLAV SLTLLIASGV AEYLKYPVVT 420
  421 FVLRHYLRFC IFGLVGAFVA AAWSYWLVDT AKYNVLRQTL TNDYGRTGSF VVDFALGRQL 480
  481 NPKWLGRVDW KQFQYRLSLV TTLIYATCYI YQTLVWPQKP QLGEQEGYLY QAKYYWNNVN 540
  541 YDPATLFSAS CLLFYVLDAI IFEHHLSSSF ELQHEGYGCL LLLRYAATPY LLTAVTKYFY 600
  601 EQRVPISCWY APLAVAALLS LGLLVKRFSC AYKYKYRLNS QSPIFANIET IHTYQGSRLL 660
  661 LSGMWGWVRQ PNYLGDIVAL LALAAPMALR PAWPPVLGLS LIILLLLHRA TRANARNQAR 720
  721 YHSSWQRYST QVRSYILPRV Y