YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9865-PB, CG9865-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.87
Non-Cytoplasmic	42	97	0.92
Transmembrane Helix	98	119	0.82
Cytoplasmic	120	180	0.88
Transmembrane Helix	181	199	0.78
Non-Cytoplasmic	200	208	0.68
Transmembrane Helix	209	230	0.76
Cytoplasmic	231	262	0.72
Transmembrane Helix	263	284	0.90
Non-Cytoplasmic	285	324	0.83
Transmembrane Helix	325	345	0.78
Cytoplasmic	346	352	0.63
Transmembrane Helix	353	371	0.88
Non-Cytoplasmic	372	375	0.67
Transmembrane Helix	376	394	0.78
Cytoplasmic	395	399	0.77
Transmembrane Helix	400	420	0.91
Non-Cytoplasmic	421	427	0.77
Transmembrane Helix	428	450	0.80
Cytoplasmic	451	466	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTKAATTG WQRLGRRILY TSFRTHLLIS ALLRIALICY GQLHDSQSAV PYTDIDYKVV  60
   61 TDGARQVLAG DTPFARHTYR YSPIMAYLQT FNILLHPAWG KLLYATFDLL IATLIYRLVH 120
  121 MEIKSQYQKT VQHLLSKFNR PRDSDQSLDA LDERSHPENL ARASACFWLY NPLTAVISTR 180
  181 GSGDCFSSFF VILTIYLLLK SEHNVTRSYW LIFGAGLAHG LVIHLRLYPL LFSLAYYLSL 240
  241 STRLTQTPLD FLCQILRPNK QQLCLISGTL ISLVAFTWTF YTMYGWEYIY EAYLYHFVRK 300
  301 DPRHNFSLQF LLQYLGSASS VAEPSAILKT LVLAPQFLLI LYLSLSFGQF RQTLPFCIFA 360
  361 VAFVIVTYNS VVTSQYFIWY LAILPLCLNN FKMLSWRRCF GLLFLWLLAQ ALWLLPAYLL 420
  421 EFHTWNTFYW IGLQGAVFFA TNGYILEQLL SHYGFTQFKI SYRKLL