YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr57a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLYFFREP ETVFDCAAFI CILQFLMGCN GFGIRRSTFR ISWASRIYSM SVAIAAFCCL  60
   61 FGSLSVLLAE EDIRERLAKA DNLVLSISAL ELLMSTLVFG VTVISLQVFA RRHLGIYQRL 120
  121 AALDARLMSD FGANLNYRKM LRKNIAVLGI VTTIYLMAIN SAAVQVASGH RALFLLFALC 180
  181 YTIVTGGPHF TGYVHMTLAE MLGIRFRLLQ QLLQPEFLNW RFPQLHVQEL RIRQVVSMIQ 240
  241 ELHYLIQEIN RVYALSLWAA MAHDLAMSTS ELYILFGQSV GIGQQNEEEN GSCYRMLGYL 300
  301 ALVMIPPLYK LLIAPFYCDR TIYEARRCLR LVEKLDDWFP QKSSLRPLVE SLMSWRIQAK 360
  361 IQFTSGLDVV LSRKVIGLFT SILVNYLLIL IQFAMTQKMG EQIEQQKIAL QEWIGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.91
Transmembrane Helix	13	34	0.88
Cytoplasmic	35	46	0.85
Transmembrane Helix	47	69	0.91
Non-Cytoplasmic	70	86	0.91
Transmembrane Helix	87	110	0.87
Cytoplasmic	111	144	0.96
Transmembrane Helix	145	164	0.95
Non-Cytoplasmic	165	172	0.72
Transmembrane Helix	173	197	0.86
Cytoplasmic	198	374	0.77
Transmembrane Helix	375	396	0.79
Non-Cytoplasmic	397	416	0.77