YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10444-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.90
Cytoplasmic	31	47	0.93
Transmembrane Helix	48	70	0.90
Non-Cytoplasmic	71	76	0.91
Transmembrane Helix	77	104	0.82
Cytoplasmic	105	124	0.93
Transmembrane Helix	125	147	0.90
Non-Cytoplasmic	148	155	0.81
Transmembrane Helix	156	178	0.86
Cytoplasmic	179	189	0.69
Transmembrane Helix	190	210	0.88
Non-Cytoplasmic	211	235	0.89
Transmembrane Helix	236	255	0.95
Cytoplasmic	256	275	0.92
Transmembrane Helix	276	298	0.93
Non-Cytoplasmic	299	328	0.95
Transmembrane Helix	329	353	0.76
Cytoplasmic	354	383	0.86
Transmembrane Helix	384	405	0.91
Non-Cytoplasmic	406	412	0.72
Transmembrane Helix	413	434	0.92
Cytoplasmic	435	441	0.87
Transmembrane Helix	442	460	0.95
Non-Cytoplasmic	461	509	0.94
Transmembrane Helix	510	530	0.93
Cytoplasmic	531	587	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVGTFDAWD AAVLITILVI SALIGIYYRY TGGKQKTTQE YLMADQSMTT FPVSFSLMAS  60
   61 FMSAISLMGV SNESYEFGTI FCVINIAYVL STPIAAYFFL PVFYRMRTTS VYEYLERRFG 120
  121 QATRLSASLA FTVQMVLYMG IALYAPALAL EAVTGIHRSM AIVVIGLVCT FYSTLGGLKA 180
  181 VLITDVFQSF LMFAAIYAVI AVSAIKAGGF AAIWDVAVER GRVNFIEFSL DPTVRHTWWS 240
  241 LIIGGMVTYL SLYGVNQTQV QRLLSVRNLK SAQSALWWNL PILGMLSFST IFSGLSIFYY 300
  301 YRDCDPLLKG RIDKRDQIMP LFALETMGQY PGLCGLFVSG IFSASLSTIS SAVTSLSAVT 360
  361 LEDYLKPLYK AIFKRTLIDS KSTMPTKIVA CIFGLLCIGL AFVAGSMGGV LQASLTIFGV 420
  421 VGGPLLAIFT LGVCTTRSNQ RGVLLGFLVS LIVSFWMGFG GPKPKPVTLE FSTAGCENAT 480
  481 AVMARAIELS SKSSGVVIEP DYFWLYRISY LWLSVIGFLI AVVVGYFSSI VLAHCGKAEN 540
  541 AEIYLDKSRK QLDYDLFAPM LSRRWRRHKE EQDQTAQDET LTKLTEQ