YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or56a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVKDLLLS PTTFEDPIFG THLRYFQWYG YVASKDQNRP LLSLIRCTIL TASIWLSCAL  60
   61 MLARVFRGYE NLNDGATSYA TAVQYFAVSI AMFNAYVQRD KVISLLRVAH SDIQNLMHEA 120
  121 DNREMELLVA TQAYTRTITL LIWIPSVIAG LMAYSDCIYR SLFLPKSVFN VPAVRRGEEH 180
  181 PILLFQLFPF GELCDNFVVG YLGPWYALGL GITAIPLWHT FITCLMKYVN LKLQILNKRV 240
  241 EEMDITRLNS KLVIGRLTAS ELTFWQMQLF KEFVKEQLRI RKFVQELQYL ICVPVMADFI 300
  301 IFSVLICFLF FALTVGVPSK MDYFFMFIYL FVMAGILWIY HWHATLIVEC HDELSLAYFS 360
  361 CGWYNFEMPL QKMLVFMMMH AQRPMKMRAL LVDLNLRTFI DIGRGAYSYF NLLRSSHLY

Type	Start	End	Confidence
Cytoplasmic	1	43	0.97
Transmembrane Helix	44	66	0.89
Non-Cytoplasmic	67	75	0.90
Transmembrane Helix	76	97	0.89
Cytoplasmic	98	132	0.97
Transmembrane Helix	133	155	0.83
Non-Cytoplasmic	156	204	0.89
Transmembrane Helix	205	229	0.82
Cytoplasmic	230	288	0.91
Transmembrane Helix	289	313	0.91
Non-Cytoplasmic	314	322	0.73
Transmembrane Helix	323	342	0.93
Cytoplasmic	343	419	0.81