YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24655184, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	51	0.76
Transmembrane Helix	52	73	0.86
Cytoplasmic	74	93	0.89
Transmembrane Helix	94	117	0.80
Non-Cytoplasmic	118	181	0.89
Transmembrane Helix	182	203	0.90
Cytoplasmic	204	209	0.89
Transmembrane Helix	210	231	0.90
Non-Cytoplasmic	232	253	0.84
Transmembrane Helix	254	277	0.89
Cytoplasmic	278	289	0.82
Transmembrane Helix	290	312	0.89
Non-Cytoplasmic	313	353	0.92
Transmembrane Helix	354	377	0.90
Cytoplasmic	378	390	0.87
Transmembrane Helix	391	411	0.90
Non-Cytoplasmic	412	425	0.76
Transmembrane Helix	426	447	0.95
Cytoplasmic	448	467	0.94
Transmembrane Helix	468	487	0.97
Non-Cytoplasmic	488	501	0.87
Transmembrane Helix	502	525	0.90
Cytoplasmic	526	561	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQLEISKKS EKPAEKPAEQ WGNGLEFLFS CISLSVGLGN IWRFPYIAFQ NGGGTFVIPY  60
   61 LIALLVIGRP VYYLEISLGQ FTGRGVVKAF DMAPLLKGVA LGQVLATAAS ITYYSSIMAL 120
  121 TLRFWLASFG SELPWSRCWE SWGTDCHDGN AQNSSGKMSP AQLREILHEV PNIDNGLSLP 180
  181 NWQLVACLAI AWLVIGGVLI RGIKSSGKAA YFLGVFPYVV LLILLLRAVT LPGAIDGIIY 240
  241 FFKPQWRELL NPLVWYAAVT QVFFSLAICF GTLITYASYN NFNRNVYNDI VIITTMDSCS 300
  301 SIIAGCITFG ILGNLARETG NPDIGSVVKG GAGLAFISYP EAIAKFEYVP QMFAVLFFLM 360
  361 LFVLGIGSTV GMGSCILRVI RDQFGLRSPP IWKLASGLTV LGFSVSIVYM TPGGQFILNL 420
  421 VDFYGVSFTA LILAIGELVA VAWIYGVNRF CEDIKFMMGI ETGWYWRLCW RFITPGLMTA 480
  481 VLIYMLLDMS ALEYKGVGYP TLAHVFGCFL ATLGLIQLPG WAIYAIYKKR GHNGSFWQRI 540
  541 RAACKPSDTW GPANVQLDAT I